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Game2026-01-24T23:36:18+00:00monthlyhttps://petridishtalk.com/2021/08/11/rnaseq/2025-11-04T18:59:31+00:00monthlyhttps://petridishtalk.com/me/https://petridishtalk.com/wp-content/uploads/2010/02/unnamed.gifunnamedhttps://petridishtalk.com/wp-content/uploads/2010/02/img_2328.jpgIMG_2328https://petridishtalk.com/wp-content/uploads/2010/02/image_1363915105340398.jpgimage_1363915105340398https://petridishtalk.com/wp-content/uploads/2010/02/screen-shot-2013-02-01-at-4-14-31-pm.pngScreen Shot 2013-02-01 at 4.14.31 PMhttps://petridishtalk.com/wp-content/uploads/2010/02/photo4.jpegmehttps://petridishtalk.com/wp-content/uploads/2010/02/photo3.jpegMohttps://petridishtalk.com/wp-content/uploads/2010/02/picture-1.pngPicture 1Diffraction Patternshttps://petridishtalk.com/wp-content/uploads/2010/02/img_0117.jpgIMG_0117https://petridishtalk.com/wp-content/uploads/2010/02/photo2.jpegMehttps://petridishtalk.com/wp-content/uploads/2010/02/photo1.jpegMe2025-03-04T21:20:37+00:00weekly0.6https://petridishtalk.com/2024/08/27/fun-conferences-bio-viz/https://petridishtalk.com/wp-content/uploads/2024/08/pipedal_poster.pngPipeDal_posterhttps://petridishtalk.com/wp-content/uploads/2024/08/screen-shot-2024-08-27-at-11.02.43-pm.pngScreen Shot 2024-08-27 at 11.02.43 PMhttps://petridishtalk.com/wp-content/uploads/2024/08/screen-shot-2024-08-27-at-10.52.31-pm.pngScreen Shot 2024-08-27 at 10.52.31 PMhttps://petridishtalk.com/wp-content/uploads/2024/08/screen-shot-2024-08-27-at-10.32.30-pm.pngScreen Shot 2024-08-27 at 10.32.30 PMhttps://petridishtalk.com/wp-content/uploads/2024/08/1maxresdefault-1.jpg1maxresdefault 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PMhttps://petridishtalk.com/wp-content/uploads/2024/05/pascaleandmofriday_30_websize.jpgPascale and Mohttps://petridishtalk.com/wp-content/uploads/2024/05/img_0287.jpgimg_0287https://petridishtalk.com/wp-content/uploads/2024/05/air.pngairhttps://petridishtalk.com/wp-content/uploads/2024/05/screen-shot-2022-03-10-at-10.31.41-am.pngscreen-shot-2022-03-10-at-10.31.41-amhttps://petridishtalk.com/wp-content/uploads/2024/05/pascaleandmo_35_websize.jpegPascale and Mohttps://petridishtalk.com/wp-content/uploads/2024/05/sunday_40_websize.jpegPascale and Mohttps://petridishtalk.com/wp-content/uploads/2024/05/pmhaldi_63-1.jpgPascale and Mohttps://petridishtalk.com/wp-content/uploads/2024/05/pmhaldi_63.jpgPascale and Mo2024-05-25T04:04:21+00:00monthlyhttps://petridishtalk.com/2023/01/02/e-ink-dev-board-to-track-fetal-development/https://petridishtalk.com/wp-content/uploads/2023/01/img_1574-1.pngimg_1574-1https://petridishtalk.com/wp-content/uploads/2023/01/img_1574.pngimg_15742023-01-18T03:09:36+00:00monthlyhttps://petridishtalk.com/2022/11/30/totallytubular/https://petridishtalk.com/wp-content/uploads/2022/11/x15710645.jpgx15710645https://petridishtalk.com/wp-content/uploads/2022/11/screen-shot-2022-11-25-at-1.28.58-pm.pngscreen-shot-2022-11-25-at-1.28.58-pmhttps://petridishtalk.com/wp-content/uploads/2022/11/857px-electron_orbitals.png857px-electron_orbitalshttps://petridishtalk.com/wp-content/uploads/2022/11/screen-shot-2022-11-25-at-1.31.14-pm.pngscreen-shot-2022-11-25-at-1.31.14-pmhttps://petridishtalk.com/wp-content/uploads/2022/11/zkinesinloops.gifzkinesinloopshttps://petridishtalk.com/wp-content/uploads/2022/11/zmicrotubules__1__44005__1_blue_red_green.jpgzmicrotubules__1__44005__1_blue_red_greenhttps://petridishtalk.com/wp-content/uploads/2022/11/z1-3-9-mitotic-spindle.jpgz1-3-9-mitotic-spindlehttps://petridishtalk.com/wp-content/uploads/2022/11/tubular.pngtubular2022-11-30T22:28:13+00:00monthlyhttps://petridishtalk.com/2009/12/10/some-thoughts-on-the-mind/https://petridishtalk.com/wp-content/uploads/2009/12/01-08neuronbig2.jpg01-08NeuronBIG2021-05-24T19:59:33+00:00monthlyhttps://petridishtalk.com/2014/05/22/hybrid-assemblies-from-short-and-long-reads-for-indel-resolution-finding-the-missing-puzzle-piece/https://petridishtalk.com/wp-content/uploads/2014/05/screen-shot-2014-05-22-at-4-47-35-pm.pngScreen Shot 2014-05-22 at 4.47.35 PMFig 3: GATK with Dindel Still has High FPRhttps://petridishtalk.com/wp-content/uploads/2014/05/screen-shot-2014-03-23-at-6-58-20-pm.pngScreen Shot 2014-03-23 at 6.58.20 PMUsing Haplotype Calculations with Dindel, SeqAn, and Boost to Resolve INDELshttps://petridishtalk.com/wp-content/uploads/2014/05/screen-shot-2014-03-23-at-5-17-34-pm.pngScreen Shot 2014-03-23 at 5.17.34 PMUsing Haplotype Calculations with Dindel, SeqAn, and Boost to Resolve INDELshttps://petridishtalk.com/wp-content/uploads/2014/05/screen-shot-2014-05-22-at-12-31-47-pm.pngScreen Shot 2014-05-22 at 12.31.47 PMhttps://petridishtalk.com/wp-content/uploads/2014/02/screen-shot-2014-02-27-at-10-55-38-am.pngScreen Shot 2014-02-27 at 10.55.38 AMFig 4: Resolved Structural Variant2018-09-30T05:41:33+00:00monthlyhttps://petridishtalk.com/2014/10/02/retooling-analysis-pipelines-from-human-to-ebov-ngs-data-for-rapid-alignment-and-strain-identification/https://petridishtalk.com/wp-content/uploads/2014/10/screen-shot-2014-10-01-at-12-58-28-pm.pngScreen Shot 2014-10-01 at 12.58.28 PMhttps://petridishtalk.com/wp-content/uploads/2014/10/screen-shot-2014-10-01-at-4-11-54-pm.pngScreen Shot 2014-10-01 at 4.11.54 PMhttps://petridishtalk.com/wp-content/uploads/2014/10/screen-shot-2014-10-01-at-12-13-06-pm.pngScreen-Shot-2014-10-01-at-12.13.06-PMhttps://petridishtalk.com/wp-content/uploads/2014/10/res_srr24.pngRes_SRR24Very few regions from 2014 map to the Reston referencehttps://petridishtalk.com/wp-content/uploads/2014/10/screen-shot-2014-10-01-at-12-26-01-pm.pngScreen Shot 2014-10-01 at 12.26.01 PMhttps://petridishtalk.com/wp-content/uploads/2014/09/srr14.pngSRR14Coverage map of SRA data from 2014 outbreak in Sierra Leone to the Zaire reference genome.2018-09-30T05:39:36+00:00monthlyhttps://petridishtalk.com/2014/01/14/notabigdeal-grch38/https://petridishtalk.com/wp-content/uploads/2014/01/37v38overlaptata.png37v38overlapTATAFig.5: Pileup Differencehttps://petridishtalk.com/wp-content/uploads/2014/01/snpeff_fig2.pngsnpEff_fig2Fig.4: Chr20 Annotation of Regional Structurehttps://petridishtalk.com/wp-content/uploads/2014/01/37v38fartata_panels.png37v38farTATA_panelsHigh-level Alignment Topologyhttps://petridishtalk.com/wp-content/uploads/2014/01/snpeff_fig4.pngsnpEff_fig4Ts/Tv Ratios between GRCh37 & 38https://petridishtalk.com/wp-content/uploads/2014/01/37v38closeuptata.png37v38closeupTATAChromosome 20 Assembly With BWA2023-02-17T16:24:28+00:00monthlyhttps://petridishtalk.com/2012/02/27/chaos-game-analysis-of-genomes/https://petridishtalk.com/wp-content/uploads/2012/02/163965394_cgr.png163965394_CGRSignal transducer 5B (STAT5B), on chromosome 17https://petridishtalk.com/wp-content/uploads/2012/02/g1346a094.gifg1346a094g1346a094 on Chromosome 7https://petridishtalk.com/wp-content/uploads/2012/02/screen-shot-2012-02-27-at-1-11-08-am.pngScreen shot 2012-02-27 at 1.11.08 AMEach of the four corners of the square is labelled 'a', 'c', 'g', or 't'https://petridishtalk.com/wp-content/uploads/2012/02/screen-shot-2012-02-27-at-1-07-35-am.pngScreen shot 2012-02-27 at 1.07.35 AMEach of the four corners of the square is labelled 'a', 'c', 'g', or 't'https://petridishtalk.com/wp-content/uploads/2012/02/hscmm5.gifHsCmM5H. Sapienshttps://petridishtalk.com/wp-content/uploads/2012/02/sierpinski.gifsierpinskiTriforce Powerhttps://petridishtalk.com/wp-content/uploads/2012/02/graftal4.jpgGraftal4L-System IFS2017-06-11T02:58:59+00:00monthlyhttps://petridishtalk.com/2013/02/01/variant-discovery-annotation-filtering-with-samtools-the-gatk/https://petridishtalk.com/wp-content/uploads/2013/02/screen-shot-2013-01-05-at-12-46-12-am.pngrsID HiveTrio Variant Visualization w/ HivePlothttps://petridishtalk.com/wp-content/uploads/2013/02/screen-shot-2013-02-01-at-1-03-18-pm.pngAnnotated VCFAnnotated VCF, notice rsIDs in 3rd columnhttps://petridishtalk.com/wp-content/uploads/2013/02/screen-shot-2013-02-01-at-12-44-50-pm.pngScreen Shot 2013-02-01 at 12.44.50 PMRaw VCF file from Samtoolshttps://petridishtalk.com/wp-content/uploads/2013/02/screen-shot-2013-02-01-at-12-53-20-pm.pngVCF Understanding the Variant Call Format2017-06-11T02:57:39+00:00monthlyhttps://petridishtalk.com/paperwork/2016-11-28T19:10:03+00:00weekly0.6https://petridishtalk.com/2012/11/18/exome-sequence-assembly-utilizing-bowtie-samtools/https://petridishtalk.com/wp-content/uploads/2012/11/screen-shot-2012-11-18-at-11-49-03-am.pngOG Browserhttps://petridishtalk.com/wp-content/uploads/2012/11/screen-shot-2012-11-18-at-11-45-03-am.pngOG Browserhttps://petridishtalk.com/wp-content/uploads/2012/11/screen-shot-2012-11-18-at-11-32-38-am.pngOG Browserhttps://petridishtalk.com/wp-content/uploads/2012/11/screen-shot-2012-11-18-at-11-05-02-am.pngScreen Shot 2012-11-18 at 11.05.02 AMhttps://petridishtalk.com/wp-content/uploads/2012/11/screen-shot-2012-11-18-at-11-21-25-am.pngScreen Shot 2012-11-18 at 11.21.25 AMIntegrative Genomics Viewerhttps://petridishtalk.com/wp-content/uploads/2012/11/3.png3https://petridishtalk.com/wp-content/uploads/2012/11/screen-shot-2012-11-17-at-1-54-58-pm.pngScreen Shot 2012-11-17 at 1.54.58 PMhttps://petridishtalk.com/wp-content/uploads/2012/11/screen-shot-2012-11-17-at-1-10-58-pm.pngScreen Shot 2012-11-17 at 1.10.58 PMIn the case of an exome project there data is split into approximately 20-30 fastq files per individual 2014-04-05T23:51:53+00:00monthlyhttps://petridishtalk.com/2013/08/27/mapping-kegg-pathway-interactions-with-bioconductor/https://petridishtalk.com/wp-content/uploads/2013/08/screen-shot-2013-08-27-at-5-49-31-pm.pngScreen Shot 2013-08-27 at 5.49.31 PMhttps://petridishtalk.com/wp-content/uploads/2013/08/screen-shot-2013-08-27-at-5-41-11-pm.pngScreen Shot 2013-08-27 at 5.41.11 PMhttps://petridishtalk.com/wp-content/uploads/2013/08/screen-shot-2013-08-27-at-5-31-52-pm.pngScreen Shot 2013-08-27 at 5.31.52 PMhttps://petridishtalk.com/wp-content/uploads/2013/08/screen-shot-2013-08-27-at-2-26-09-pm.pngScreen Shot 2013-08-27 at 2.26.09 PMhttps://petridishtalk.com/wp-content/uploads/2013/08/screen-shot-2013-08-27-at-2-21-24-pm.pngScreen Shot 2013-08-27 at 2.21.24 PMhttps://petridishtalk.com/wp-content/uploads/2013/08/kgml_class.pngkgml_classKEGG Markup Languagehttps://petridishtalk.com/wp-content/uploads/2013/08/screen-shot-2013-08-27-at-1-33-45-pm.pngScreen Shot 2013-08-27 at 1.33.45 PMKEGG with VCF 4.1https://petridishtalk.com/wp-content/uploads/2013/08/metabolic_map.pngmetabolic_mapGlobal Metabolic Pathway Map of H.sapien by Kanehisa Laboratories2014-04-05T23:44:58+00:00monthlyhttps://petridishtalk.com/2012/05/24/k-mistry-typeface-by-ranmalee-jayaratne/https://petridishtalk.com/wp-content/uploads/2012/05/screen-shot-2012-05-26-at-7-29-28-pm.pngScreen shot 2012-05-26 at 7.29.28 PM2014-01-15T02:45:21+00:00monthlyhttps://petridishtalk.com/2012/10/08/virtualization-of-raw-experimental-data/https://petridishtalk.com/wp-content/uploads/2012/10/encode-feature-graphic.jpgencode-feature-graphichttps://petridishtalk.com/wp-content/uploads/2012/10/screen-shot-2012-10-08-at-3-12-17-pm.pngScreen Shot 2012-10-08 at 3.12.17 PM2012-10-08T23:04:00+00:00monthlyhttps://petridishtalk.com/2012/09/03/anomaly-detection-in-the-human-genome/https://petridishtalk.com/wp-content/uploads/2012/09/screen-shot-2012-09-03-at-11-53-58-am.pngMulti-pass Exome filtering is illustratedMulti-pass Exome filtering is illustrated2012-09-03T19:01:03+00:00monthlyhttps://petridishtalk.com/2012/06/30/gene-visualization/https://petridishtalk.com/wp-content/uploads/2012/06/584178958.pngAyasdi Network Maphttps://petridishtalk.com/wp-content/uploads/2012/06/screen-shot-2012-06-30-at-8-17-34-pm.pngDNA WalkIn a DNA walk each base is assigned a direction, i.e. A up, T, down, G left, C right. https://petridishtalk.com/wp-content/uploads/2012/06/screen-shot-2012-06-30-at-7-19-06-pm.pngCircular Genome MapCircular genome maps have become quite popular of late, as they allow whole genome visualization in a single snapshot. Moreover, multiple dimensions can be represented, as concentric circles.https://petridishtalk.com/wp-content/uploads/2012/06/screen-shot-2012-06-30-at-7-42-49-pm.pngScreen shot 2012-06-30 at 7.42.49 PMhttps://petridishtalk.com/wp-content/uploads/2012/06/screen-shot-2012-06-30-at-7-40-25-pm.pngScreen shot 2012-06-30 at 7.40.25 PMhttps://petridishtalk.com/wp-content/uploads/2012/06/screen-shot-2012-06-30-at-7-34-55-pm.pngScreen shot 2012-06-30 at 7.34.55 PMhttps://petridishtalk.com/wp-content/uploads/2012/06/igv_cherry.gifigv_cherryHeat maps have the advantage of providing a larger scale correlative representation of two dimensional data. While still holding on to some of the qualities of track browsing. https://petridishtalk.com/wp-content/uploads/2012/06/screen-shot-2012-06-30-at-6-44-28-pm.gifTrack BrowsersTrack browsers can display multiple dimensions of the same set of data as well as comparative sets. However, their usefulness is often limited to close-level, specific targets. Whole genome exploration and comparison within these browsers tend to be tedious. 2012-07-01T18:28:54+00:00monthlyhttps://petridishtalk.com/2012/05/26/what-are-you-waiting-for-a-certain-shade-of-green-core-science-tech-development/https://petridishtalk.com/wp-content/uploads/2012/05/screen-shot-2012-05-26-at-6-19-15-pm.pngScreen shot 2012-05-26 at 6.19.15 PMhttps://petridishtalk.com/wp-content/uploads/2012/05/screen-shot-2012-05-26-at-5-34-00-pm.pngScreen shot 2012-05-26 at 5.34.00 PMVC funds have posted negative mean and median returns, starting in 1999 through the present. A small fraction of firms are the exception. https://petridishtalk.com/wp-content/uploads/2012/05/screen-shot-2012-05-26-at-4-54-24-pm.pngScreen shot 2012-05-26 at 4.54.24 PMFrom "Amusing Ourselves to Death" By Neil Postman, a book about the possibility that Aldous Huxley, not Orwell, was right.2012-05-27T19:02:48+00:00monthlyhttps://petridishtalk.com/2012/04/03/closing-the-gap-between-computational-pharmaceutical-innovation/https://petridishtalk.com/wp-content/uploads/2012/01/screen-shot-2012-01-30-at-10-50-10-am.pngPharmacogenomicsFig 4 | Pharmacogenomics attempts to correlate how individuals will respond to drugs based genomic variability. https://petridishtalk.com/wp-content/uploads/2012/01/wiki_clustering.pngEarly-Stage Computational Drug DesignFig 3 | Early-stage computational drug design flowhttps://petridishtalk.com/wp-content/uploads/2012/01/screen-shot-2012-01-29-at-11-38-39-pm.pngSuccessful Discovery StrategiesFigure 2 | Computer-assisted screenings and traditional discovery strategy distributions of new molecular entities (NME). Followers are in the same class as previously approved drugs.https://petridishtalk.com/wp-content/uploads/2012/01/screen-shot-2012-01-29-at-11-24-49-pm.pngDrug Discovery StrategiesFigure 2 | Distribution of drug discovery strategies between computer-assisted screenings and traditional new molecular entities. Followers are in the same class as previously approved drugs.https://petridishtalk.com/wp-content/uploads/2012/01/screen-shot-2012-01-29-at-11-00-58-pm.pngDrug Probability of Success to MarketFigure 1 | Probability of success to market from key milestones. Data: cohort of 14 companies.2012-04-03T18:22:16+00:00monthlyhttps://petridishtalk.com/2011/12/27/bioinformatics-in-bengal/https://petridishtalk.com/wp-content/uploads/2011/12/screen-shot-2011-12-28-at-1-56-38-am.pngScreen shot 2011-12-28 at 1.56.38 AMhttps://petridishtalk.com/wp-content/uploads/2011/12/img_0953.jpgDataSoftLush green home of DataSofthttps://petridishtalk.com/wp-content/uploads/2011/12/img_0767.jpgCurzon HallDept. Biochemistry University of Dhaka2011-12-27T21:54:06+00:00monthlyhttps://petridishtalk.com/2011/07/02/yoga-a-cognitive-exercise/https://petridishtalk.com/wp-content/uploads/2010/10/nyas.jpgNYAS2011-12-07T08:47:45+00:00monthlyhttps://petridishtalk.com/2011/10/23/cancer-stress-treatment-success/https://petridishtalk.com/wp-content/uploads/2011/10/0.jpegGenomic Instability and an Increased Incidence of Spontaneous Cancer in Aging mTR−/− Micehttps://petridishtalk.com/wp-content/uploads/2011/10/telomere_chromosome.jpegtelomere_chromosomeTelomere Caps2011-10-24T04:57:58+00:00monthlyhttps://petridishtalk.com/2011/10/06/zero-mode-waveguide-single-molecule-real-time-sequencing/https://petridishtalk.com/wp-content/uploads/2011/10/screen-shot-2011-10-05-at-8-57-50-pm.pngScreen shot 2011-10-05 at 8.57.50 PMPacBio's SMRT Prototypehttps://petridishtalk.com/wp-content/uploads/2011/10/screen-shot-2011-10-05-at-8-58-10-pm.pngScreen shot 2011-10-05 at 8.58.10 PMhttps://petridishtalk.com/wp-content/uploads/2011/10/screen-shot-2011-10-05-at-8-57-37-pm.pngScreen shot 2011-10-05 at 8.57.37 PMZero-mode Waveguide - a hole, tens of nanometers in diameter, smaller than the wavelength of light used. Providing a window for watching DNA polymerase write.https://petridishtalk.com/wp-content/uploads/2011/10/screen-shot-2011-10-03-at-8-52-05-pm.pngScreen shot 2011-10-03 at 8.52.05 PMhttps://petridishtalk.com/wp-content/uploads/2011/10/screen-shot-2011-10-03-at-8-47-27-pm.pngScreen shot 2011-10-03 at 8.47.27 PMShort & Long Readshttps://petridishtalk.com/wp-content/uploads/2011/10/screen-shot-2011-10-03-at-8-45-42-pm.pngScreen shot 2011-10-03 at 8.45.42 PMZero-mode Waveguide: A nanophotonic chamber, smaller than the wavelength of light detected. Enough so that DNA polymerase behavior can be adequately detected.2011-10-14T10:59:01+00:00monthlyhttps://petridishtalk.com/2011/08/14/drug-development-from-binary-to-gradient-success/https://petridishtalk.com/wp-content/uploads/2011/08/screen-shot-2011-08-14-at-6-52-51-pm.pngTrending Costs of Drug Development Trending Costs of Drug Development https://petridishtalk.com/wp-content/uploads/2011/08/screen-shot-2011-08-14-at-9-40-31-pm.pngScreen shot 2011-08-14 at 9.40.31 PMDraft FDA Guidance on DNA Sequencing & Clinical Trials https://petridishtalk.com/wp-content/uploads/2011/08/screen-shot-2011-08-14-at-6-53-07-pm.pngRD costs of new chemical entity (NCE)RD costs of new chemical entity (NCE)https://petridishtalk.com/wp-content/uploads/2011/08/screen-shot-2011-08-14-at-6-54-01-pm.pngScreen shot 2011-08-14 at 6.54.01 PMDistribution of Development Funding 2011-08-15T06:31:22+00:00monthlyhttps://petridishtalk.com/2011/07/17/the-fall-in-gov-funding-rise-of-privatization-in-genome-databases/https://petridishtalk.com/wp-content/uploads/2011/07/screen-shot-2011-07-17-at-9-37-09-pm.pngScreen shot 2011-07-17 at 9.37.09 PMSaid Infamous Graphhttps://petridishtalk.com/wp-content/uploads/2011/07/screen-shot-2011-07-17-at-7-38-22-pm.pngScreen shot 2011-07-17 at 7.38.22 PMSimAlignhttps://petridishtalk.com/wp-content/uploads/2011/07/screen-shot-2011-07-17-at-8-15-56-pm.pngSRA2011-12-20T08:47:56+00:00monthlyhttps://petridishtalk.com/2011/07/10/shdh_google_blast/https://petridishtalk.com/wp-content/uploads/2011/07/picture-2.pngScreenshotBLAST+ in actionhttps://petridishtalk.com/wp-content/uploads/2011/07/us-nlm-ncbi-logo.pngUS-NLM-NCBI-Logohttps://petridishtalk.com/wp-content/uploads/2011/07/img_03132.jpgIMG_0313https://petridishtalk.com/wp-content/uploads/2011/07/img_03131.jpgIMG_0313https://petridishtalk.com/wp-content/uploads/2011/07/img_0313.jpgIMG_03132024-11-05T23:46:02+00:00monthlyhttps://petridishtalk.com/2011/07/02/emo/https://petridishtalk.com/wp-content/uploads/2011/06/159153671.jpegDaydream Nationhttps://petridishtalk.com/wp-content/uploads/2011/06/hindenburg-exubera-2.jpeghindenburg-exubera-2Infamous Exubera Insulin Disasterhttps://petridishtalk.com/wp-content/uploads/2011/06/15915367.jpeg159153672011-07-03T01:54:11+00:00monthlyhttps://petridishtalk.com/2011/04/17/decided-no-we-just-finished-saying-good-morning-sage-congress-2011/https://petridishtalk.com/wp-content/uploads/2011/04/2126533900_30e4e1cd4f_z.jpeg2126533900_30e4e1cd4f_zIllustrated by Derek Yuhttps://petridishtalk.com/wp-content/uploads/2011/04/picture-1.pngPicture 1Example of an effort which aligns with & was presented at Sagehttps://petridishtalk.com/wp-content/uploads/2011/04/sage_bionetworks_logo.jpegSage_bionetworks_logo2011-06-20T03:40:59+00:00monthlyhttps://petridishtalk.com/2009/12/14/bold-fmri-a-clear-new-view-of-the-brain/https://petridishtalk.com/wp-content/uploads/2009/12/hemoglobin.jpghemoglobin2011-06-03T02:25:30+00:00monthlyhttps://petridishtalk.com/2011/05/30/feed-your-head-a%ce%b2-tau-apoe/https://petridishtalk.com/wp-content/uploads/2011/05/picture-2.pngPicture 2Fig 2: Constant expression of plaque causing Aβ with varying levels of Tau shows little difference in pathology. Plaques and tangles remain present. Thus deletion or over expression of Tau is not enough to prevent AD pathology.https://petridishtalk.com/wp-content/uploads/2011/05/nft_amyloid.jpegNFT_amyloid2011-05-31T04:26:20+00:00monthlyhttps://petridishtalk.com/2010/01/17/practice-makes-perfect-dendritic-pruning-ltp/https://petridishtalk.com/wp-content/uploads/2010/01/pruned.jpgA: Neuron of Child B: Neuron of AdultA: Neuron of Child B: Neuron of Adulthttps://petridishtalk.com/wp-content/uploads/2010/01/denprune.jpgDendritic PruningDendritic Pruninghttps://petridishtalk.com/wp-content/uploads/2010/01/coverfig.gifDendritic PruningDendritic Pruninghttps://petridishtalk.com/wp-content/uploads/2010/01/twentyseven.jpgNeuron of childNeuron of childhttps://petridishtalk.com/wp-content/uploads/2010/01/twentyeight.jpgNeuron of adultNeuron of an adulthttps://petridishtalk.com/wp-content/uploads/2009/12/denarbor.jpgDendritic TreesDendritic trees2025-12-26T09:51:39+00:00monthlyhttps://petridishtalk.com/2010/03/03/neurophysiology-of-meditation-1-of-2/https://petridishtalk.com/wp-content/uploads/2010/03/picture-1.jpgPicture-1Fig 2. Bar graphs for amplitude of activation in the ‘‘early’’ part of the meditation block (the first 10 sec, excluding the first 2 sec because of hemodynamic delay) and the ‘‘late’’ part of the meditation block (120 sec to 200 sec)https://petridishtalk.com/wp-content/uploads/2010/03/picture-11.pngPicture 1Fig 2. task, where we found that a 3-month period of intensive meditation led to decreased amplitude of the late component of the event- related potential to an initial target, a marker of increased pro- Bar graphs for amplitude of activation in the ‘‘early’’ part of the meditation block (the first 10 sec, excluding the first 2 sec because of hemodynamic delay) and the ‘‘late’’ part of the meditation block (120 sec to 200 sec)https://petridishtalk.com/wp-content/uploads/2010/03/picture-4.pngPicture 4Fig. 2. Larger GM volumes in meditators (co-varied for age). Views of the right orbito-frontal cortex (left panel; p b 0.0001uncorr), right thalamus (middle panel; p b 0.0003uncorr), and left inferior temporal gyrus (right panel; p b 0.0003uncorr), where GM is larger in meditators compared to controls. The color intensity represents T-statistic values at the voxel level. The results are visualized on the mean image derived from the 44 T1-weighted scans of the subjects analyzed, and presented in neurological convention (right is right). https://petridishtalk.com/wp-content/uploads/2010/03/picture-3.pngPicture 3https://petridishtalk.com/wp-content/uploads/2010/03/picture-1.pngPicture 1Fig 1. Expert meditators & non-meditators asked to focus on a dot for extended time. A) 12 expert meditators had greater overlap of increased activation of attention-related brain regions. B) 12 non-meditators had less overlap and activation. Orange hues equal higher correlation between individuals & activation. Blue hues equal little to no correlation between regions of activation.2011-04-12T07:39:38+00:00monthlyhttps://petridishtalk.com/2011/03/27/biotech_for_hackers_1/https://petridishtalk.com/wp-content/uploads/2011/03/pdt27mar11table2.pngOld & New InteractionsFig 2: Interactions discovered by the Hig-Confidence (HC) set generated by this study in context to known relationships in the Human Interactome (created in past studies).https://petridishtalk.com/wp-content/uploads/2011/03/picture-1.pngPicture 12014-09-28T08:23:22+00:00monthlyhttps://petridishtalk.com/2011/03/04/live-future-of-genomic-medicine-iv-juan-enriquez-understanding-life-codes/https://petridishtalk.com/wp-content/uploads/2011/03/2970513014_4d01eeda1f.jpeg2970513014_4d01eeda1f2011-03-05T02:00:44+00:00monthlyhttps://petridishtalk.com/2011/01/30/dna-databases-browsers-and-services/https://petridishtalk.com/wp-content/uploads/2011/01/picture-3.pngPicture 34Peaks Simplicity & Usabilityhttps://petridishtalk.com/wp-content/uploads/2011/01/sequencher.jpegSequencherUsing Sequencherhttps://petridishtalk.com/wp-content/uploads/2011/01/vectornti-screen.jpgVectorNTI-ScreenViewing DNA sequence data on Vector NTIhttps://petridishtalk.com/wp-content/uploads/2011/01/sgd-flow.jpgSGD-FlowRetrieving A Gene From SGD2011-02-08T03:07:28+00:00monthlyhttps://petridishtalk.com/2010/03/06/neurophisology-of-meditation-2-of-2/https://petridishtalk.com/wp-content/uploads/2010/03/5565_600x450-cb1261086805.jpg5565_600x450-cb1261086805Image from National Geographic magazinehttps://petridishtalk.com/wp-content/uploads/2010/03/picture-41.pngPicture 4Fig 1 Larger GM volumes in meditators (co-varied for age). Views of the right orbito-frontal cortex, right thalamus, and left inferior temporal gyrus, where GM is larger in meditators compared to controls. The color intensity represents T-statistic values at the voxel level. 2011-03-08T21:38:48+00:00monthlyhttps://petridishtalk.com/2010/12/05/the-polymerase-chain-reaction-a-microcosm/https://petridishtalk.com/wp-content/uploads/2010/12/tech1.jpegtech1https://petridishtalk.com/wp-content/uploads/2010/12/polymerase_chain_reaction_lg.jpegPolymerase Chain ReactionBasic Principles of PCR2010-12-06T06:26:03+00:00monthlyhttps://petridishtalk.com/2009/12/10/a-breakdown-of-a-groundbreaking-article/https://petridishtalk.com/wp-content/uploads/2009/12/picture-7.pngPicture 7https://petridishtalk.com/wp-content/uploads/2009/12/picture-3.pngKim et al2010-03-22T02:23:12+00:00monthlyhttps://petridishtalk.com/2009/12/12/industry-academia-part-1/https://petridishtalk.com/wp-content/uploads/2009/12/smallregion111.jpgsmallRegion112009-12-12T09:16:10+00:00monthlyhttps://petridishtalk.comdaily1.02026-01-24T23:36:18+00:00